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annotate snpEff_2_1a/scripts/compareToEnsembl.sh @ 0:f8eaa3f8194b default tip

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Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
author greg
date Fri, 20 Apr 2012 14:47:09 -0400
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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1 #!/bin/sh
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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3 DIR=$HOME/snpEff/
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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5 java -Xmx3G \
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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6 -classpath "$DIR/lib/charts4j-1.2.jar:$DIR/lib/flanagan.jar:$DIR/lib/freemarker.jar:$DIR/lib/junit.jar:$DIR/lib/trove-2.1.0.jar:$DIR" \
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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7 ca.mcgill.mcb.pcingola.testCases.CompareToEnsembl \
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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8 $*