Mercurial > repos > greg > snpeff_v2_from_pablo

annotate snpEff_2_1a/scripts/vcfSpeedTest.sh @ 0:f8eaa3f8194b default tip

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Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
author greg
date Fri, 20 Apr 2012 14:47:09 -0400
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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1 #!/bin/sh
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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2
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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3 for testNum in 1 2 3 4
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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4 do
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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5 ./scripts/snpEffM.sh test $testNum test.1M.vcf > test.1M.out.vcf
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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6 echo
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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7 done
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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8