Mercurial > repos > greg > r_hello_world
changeset 10:a00ffd13739c draft
Uploaded
author | greg |
---|---|
date | Tue, 16 Aug 2016 09:51:48 -0400 |
parents | da9203d74d1d |
children | 887b76c1b7d1 |
files | bmsb.xml |
diffstat | 1 files changed, 43 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bmsb.xml Tue Aug 16 09:51:48 2016 -0400 @@ -0,0 +1,43 @@ +<?xml version="."?> +<tool id="bmsb_model" name="Brown Marmorated Stink Bug" version="1.0.0"> + <description>model</description> + <requirements> + <requirement type="package" version="3.3.1">r-base</requirement> + <requirement type="package" version="1.3.0">r-optparse</requirement> + </requirements> + <command> + <![CDATA[ + Rscript $__tool_directory__/bmsb.R + #if str($output_r_logging_cond.output_r_logging) == "yes": + -s "true" + -m "$output_r_log" + #end if + -o "$output" + ]]> + </command> + <inputs> + <param name="input" type="data" format="csv" label="Select temperature data" /> + <conditional name="output_r_logging_cond"> + <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages."> + <option value="yes" selected="True">Yes</option> + <option value="no">No</option> + </param> + <when value="no"/> + <when value="yes"/> + </conditional> + </inputs> + <outputs> + <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log"> + <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter> + </data> + <data name="output" format="RData"/> + </outputs> + <help> +**What it does** + +BMSB prototype tool. + </help> + <citations> + <citation></citation> + </citations> +</tool>