Mercurial > repos > greg > r_hello_world

changeset 0:304377330941 draft

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Uploaded
author greg
date Mon, 15 Aug 2016 13:33:07 -0400
parents
children 65fb665f37e3
files hello_world.R hello_world.xml
diffstat 2 files changed, 39 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hello_world.R	Mon Aug 15 13:33:07 2016 -0400
@@ -0,0 +1,12 @@
+#!/usr/bin/env Rscript
+
+suppressPackageStartupMessages(library("optparse"))
+
+
+option_list <- list(
+    make_option(c("-o", "--output"), action="store", help="Output dataset")
+)
+
+line<-"Hello World"
+base::save(line, file=opt$output)
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/hello_world.xml	Mon Aug 15 13:33:07 2016 -0400
@@ -0,0 +1,27 @@
+<?xml version="."?>
+<tool id="r_hello_world" name="R hello world" version="1.0.0">
+    <description></description>
+    <requirements>
+         <requirement type="package" version="3.3.1">r-base</requirement>
+         <requirement type="package" version="1.3.0">r-optparse</requirement>
+    </requirements>
+    <command>
+        <![CDATA[
+            Rscript $__tool_directory__/bmsb.R
+            -o "$output"
+        ]]>
+    </command>
+    <inputs>
+    </inputs>
+    <outputs>
+        <data name="output" format="RData"/>
+    </outputs>
+    <help>
+**What it does**
+ 
+Prints hello workd.
+    </help>
+    <citations>
+        <citation></citation>
+    </citations>
+</tool>