Mercurial > repos > greg > phylogenomics_analysis

changeset 30:ec58d25386fc draft

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Uploaded
author greg
date Wed, 11 Jan 2017 11:05:40 -0500
parents 7d0cc822c94e
children 40a1cb4c8426
files phylogenomics_analysis.xml
diffstat 1 files changed, 9 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/phylogenomics_analysis.xml	Tue Jan 10 12:30:52 2017 -0500
+++ b/phylogenomics_analysis.xml	Wed Jan 11 11:05:40 2017 -0500
@@ -77,8 +77,15 @@
                     #if str($input_includes_coding_sequences) == 'yes':
                         #set multiple_codon_alignments_cond = $input_includes_coding_sequences_cond.multiple_codon_alignments_cond
                         #set multiple_codon_alignments = $multiple_codon_alignments_cond.multiple_codon_alignments
-                        #set use_corresponding_coding_sequences_cond = $multiple_codon_alignments_cond.use_corresponding_coding_sequences_cond
-                        #set use_corresponding_coding_sequences = $use_corresponding_coding_sequences_cond.use_corresponding_coding_sequences
+                        #if str($input_includes_coding_sequences) == 'yes':
+                            #set use_corresponding_coding_sequences_cond = $multiple_codon_alignments_cond.use_corresponding_coding_sequences_cond
+                            #set use_corresponding_coding_sequences = $use_corresponding_coding_sequences_cond.use_corresponding_coding_sequences
+                        #else:
+                            #set use_corresponding_coding_sequences = 'no'
+                        #end if
+                    #else:
+                        #set multiple_codon_alignments = 'no'
+                        #set use_corresponding_coding_sequences = 'no'
                     #end if
 
                     #if str($multiple_sequence_alignments_option) == 'create_alignments':