Mercurial > repos > greg > phylogenomics_analysis
changeset 37:79c8d886e43b draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 12 Jan 2017 10:49:47 -0500 |
| parents | c42769258e0d |
| children | 5423ad5c4f00 |
| files | phylogenomics_analysis.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/phylogenomics_analysis.xml Thu Jan 12 10:03:58 2017 -0500 +++ b/phylogenomics_analysis.xml Thu Jan 12 10:49:47 2017 -0500 @@ -146,18 +146,18 @@ && echo "Sequence alignments and corresponding phylogenies: `ls $src_fasta_dir | grep f | wc -l` files" > $output_fasta && ls -al $src_fasta_dir | grep f >> $output_fasta - && mv $src_fasta_dir/* $dest_fasta_dir + && mv $src_fasta_dir/* $dest_fasta_dir || true #if $generate_output_aln: && echo "Multiple sequence alignments using method '$multiple_sequence_alignments_option' (note that some files may be empty): `ls $src_aln_dir | grep f | wc -l` files" > $output_aln && ls -al $src_aln_dir | grep f >> $output_aln - && mv $src_aln_dir/* $dest_aln_dir + && mv $src_aln_dir/* $dest_aln_dir || true #end if #if $generate_output_tree: && echo "Phylogenetic trees (note that some files may be empty): `ls $src_tree_dir | grep f | wc -l` files" > $output_tree && ls -al $src_tree_dir | grep f >> $output_tree - && mv $src_tree_dir/* $dest_tree_dir + && mv $src_tree_dir/* $dest_tree_dir || true #end if ]]> </command>