Mercurial > repos > greg > phylogenomics_analysis

diff phylogenomics_analysis.xml @ 32:c2ec4bb1fd5f draft

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author greg
date Wed, 11 Jan 2017 13:32:18 -0500
parents 40a1cb4c8426
children d8e7ac110e1b
line wrap: on
line diff
--- a/phylogenomics_analysis.xml	Wed Jan 11 11:13:42 2017 -0500
+++ b/phylogenomics_analysis.xml	Wed Jan 11 13:32:18 2017 -0500
@@ -54,7 +54,8 @@
             mkdir -p $dest_fasta_dir &&
 
             PhylogenomicsAnalysis
-            --num_threads "\${GALAXY_SLOTS:-4}"
+            --num_threads \${GALAXY_SLOTS:-4}
+            --no_config_override
             --orthogroup_faa "$orthogroup_faa.extra_files_path"
             --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"
             --scaffold "$scaffold"