Mercurial > repos > greg > phylogenomics_analysis

diff phylogenomics_analysis.xml @ 47:898270c680a9 draft

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Uploaded
author greg
date Fri, 03 Feb 2017 13:54:54 -0500
parents 801f467f6555
children 4cde2d993ce5
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line diff
--- a/phylogenomics_analysis.xml	Fri Feb 03 13:50:30 2017 -0500
+++ b/phylogenomics_analysis.xml	Fri Feb 03 13:54:54 2017 -0500
@@ -66,7 +66,11 @@
 
             PhylogenomicsAnalysis
             --num_threads \${GALAXY_SLOTS:-4}
-            --orthogroup_faa '$input.extra_files_path'
+            #if str($input_format) == 'ptcgf':
+                --orthogroup_faa '$input_format_cond.input_ptcgf.extra_files_path'
+            #else:
+                --orthogroup_faa '$input_format_cond.input_ptcgfcs.extra_files_path'
+            #end if
             --scaffold_dir '$scaffold_dir'
             --scaffold '$scaffold_selection'
             --method $method