Mercurial > repos > greg > phylogenomics_analysis
comparison phylogenomics_analysis.xml @ 47:898270c680a9 draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 03 Feb 2017 13:54:54 -0500 |
| parents | 801f467f6555 |
| children | 4cde2d993ce5 |
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| 46:801f467f6555 | 47:898270c680a9 |
|---|---|
| 64 #set generate_output_tree = False | 64 #set generate_output_tree = False |
| 65 #end if | 65 #end if |
| 66 | 66 |
| 67 PhylogenomicsAnalysis | 67 PhylogenomicsAnalysis |
| 68 --num_threads \${GALAXY_SLOTS:-4} | 68 --num_threads \${GALAXY_SLOTS:-4} |
| 69 --orthogroup_faa '$input.extra_files_path' | 69 #if str($input_format) == 'ptcgf': |
| 70 --orthogroup_faa '$input_format_cond.input_ptcgf.extra_files_path' | |
| 71 #else: | |
| 72 --orthogroup_faa '$input_format_cond.input_ptcgfcs.extra_files_path' | |
| 73 #end if | |
| 70 --scaffold_dir '$scaffold_dir' | 74 --scaffold_dir '$scaffold_dir' |
| 71 --scaffold '$scaffold_selection' | 75 --scaffold '$scaffold_selection' |
| 72 --method $method | 76 --method $method |
| 73 | 77 |
| 74 #if str($options_type.options_type_selector) == 'advanced': | 78 #if str($options_type.options_type_selector) == 'advanced': |