Mercurial > repos > greg > meme_psp_gen

changeset 3:79df81990900 draft

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Uploaded
author greg
date Fri, 18 Aug 2017 11:11:13 -0400
parents c32084cb7fe7
children 01d22cb1bccc
files meme_psp_gen.xml
diffstat 1 files changed, 5 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/meme_psp_gen.xml	Thu Aug 17 09:56:31 2017 -0400
+++ b/meme_psp_gen.xml	Fri Aug 18 11:11:13 2017 -0400
@@ -113,17 +113,16 @@
     <outputs>
         <data format="memepsp" name="output_psp"/>
         <data format="tabular" name="output_tabular" label="${tool.name} (report) on ${on_string}">
-            <filter>adv['report_scores_cond'] == 'yes'</filter>
+            <filter>adv['report_scores_cond']['report_scores'] == 'yes'</filter>
         </data>
     </outputs>
     <tests>
         <test>
-            <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/>
-            <param name="options_type_selector" value="basic"/>
+            <param name="primary_sequence" value="meme_psp_protein_input.fasta" ftype="fasta"/>
+            <param name="control_sequence" value="meme_psp_protein_input.fasta" ftype="fasta"/>
+            <param name="alphabet" value="protein"/>
             <param name="non_commercial_use" value="True"/>
-            <output name="html_outfile" file="meme_output_html_1.html" compare="contains"/>
-            <output name="txt_outfile" file="meme_output_txt_1.txt" lines_diff="12"/>
-            <output name="xml_outfile" file="meme_output_xml_1.xml" lines_diff="8"/>
+            <output name="output_psp" file="output.memepsp"/>
         </test>
     </tests>
     <help>