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author greg
date Mon, 11 Jan 2016 13:33:25 -0500
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1 <!DOCTYPE HTML>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <title>MEME</title>
6 <script>
7 // @JSON_VAR data
8 var data = {
9 "program": "MEME",
10 "version": "4.11.0",
11 "release": "Thu Nov 26 17:48:49 2015 +1000",
12 "stop_reason": "Stopped because requested number of motifs (1) found.",
13 "cmd": [
14 "meme",
15 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat",
16 "-o",
17 "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1929/dataset_2578_files",
18 "-nostatus", "-sf", "Galaxy_FASTA_Input", "-dna", "-mod", "zoops",
19 "-nmotifs", "1", "-wnsites", "0.8", "-minw", "8", "-maxw", "50",
20 "-wg", "11", "-ws", "1", "-maxiter", "50", "-distance", "0.001",
21 "-prior", "dirichlet", "-b", "0.01", "-plib",
22 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2577.dat",
23 "-spmap", "uni", "-spfuzz", "0.5"
24 ],
25 "options": {
26 "mod": "zoops",
27 "revcomp": false,
28 "nmotifs": 1,
29 "minw": 8,
30 "maxw": 50,
31 "minsites": 2,
32 "maxsites": 30,
33 "wnsites": 0.8,
34 "spmap": "uni",
35 "spfuzz": 0.5,
36 "maxwords": -1,
37 "prior": "dirichlet",
38 "b": 0.01,
39 "maxiter": 50,
40 "distance": 0.001,
41 "wg": 11,
42 "ws": 1,
43 "noendgaps": false,
44 "substring": true
45 },
46 "alphabet": {
47 "name": "DNA",
48 "like": "dna",
49 "ncore": 4,
50 "symbols": [
51 {
52 "symbol": "A",
53 "name": "Adenine",
54 "colour": "CC0000",
55 "complement": "T"
56 }, {
57 "symbol": "C",
58 "name": "Cytosine",
59 "colour": "0000CC",
60 "complement": "G"
61 }, {
62 "symbol": "G",
63 "name": "Guanine",
64 "colour": "FFB300",
65 "complement": "C"
66 }, {
67 "symbol": "T",
68 "aliases": "U",
69 "name": "Thymine",
70 "colour": "008000",
71 "complement": "A"
72 }, {
73 "symbol": "N",
74 "aliases": "X.",
75 "name": "Any base",
76 "equals": "ACGT"
77 }, {
78 "symbol": "V",
79 "name": "Not T",
80 "equals": "ACG"
81 }, {
82 "symbol": "H",
83 "name": "Not G",
84 "equals": "ACT"
85 }, {
86 "symbol": "D",
87 "name": "Not C",
88 "equals": "AGT"
89 }, {
90 "symbol": "B",
91 "name": "Not A",
92 "equals": "CGT"
93 }, {
94 "symbol": "M",
95 "name": "Amino",
96 "equals": "AC"
97 }, {
98 "symbol": "R",
99 "name": "Purine",
100 "equals": "AG"