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1 <!DOCTYPE HTML>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <title>MEME</title>
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6 <script>
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7 // @JSON_VAR data
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8 var data = {
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9 "program": "MEME",
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10 "version": "4.11.0",
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11 "release": "Thu Nov 26 17:48:49 2015 +1000",
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12 "stop_reason": "Stopped because requested number of motifs (1) found.",
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13 "cmd": [
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14 "meme",
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15 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat",
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16 "-o",
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17 "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1929/dataset_2578_files",
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18 "-nostatus", "-sf", "Galaxy_FASTA_Input", "-dna", "-mod", "zoops",
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19 "-nmotifs", "1", "-wnsites", "0.8", "-minw", "8", "-maxw", "50",
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20 "-wg", "11", "-ws", "1", "-maxiter", "50", "-distance", "0.001",
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21 "-prior", "dirichlet", "-b", "0.01", "-plib",
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22 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2577.dat",
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23 "-spmap", "uni", "-spfuzz", "0.5"
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24 ],
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25 "options": {
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26 "mod": "zoops",
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27 "revcomp": false,
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28 "nmotifs": 1,
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29 "minw": 8,
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30 "maxw": 50,
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31 "minsites": 2,
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32 "maxsites": 30,
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33 "wnsites": 0.8,
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34 "spmap": "uni",
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35 "spfuzz": 0.5,
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36 "maxwords": -1,
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37 "prior": "dirichlet",
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38 "b": 0.01,
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39 "maxiter": 50,
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40 "distance": 0.001,
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41 "wg": 11,
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42 "ws": 1,
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43 "noendgaps": false,
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44 "substring": true
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45 },
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46 "alphabet": {
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47 "name": "DNA",
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48 "like": "dna",
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49 "ncore": 4,
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50 "symbols": [
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51 {
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52 "symbol": "A",
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53 "name": "Adenine",
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54 "colour": "CC0000",
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55 "complement": "T"
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56 }, {
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57 "symbol": "C",
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58 "name": "Cytosine",
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59 "colour": "0000CC",
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60 "complement": "G"
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61 }, {
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62 "symbol": "G",
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63 "name": "Guanine",
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64 "colour": "FFB300",
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65 "complement": "C"
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66 }, {
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67 "symbol": "T",
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68 "aliases": "U",
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69 "name": "Thymine",
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70 "colour": "008000",
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71 "complement": "A"
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72 }, {
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73 "symbol": "N",
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74 "aliases": "X.",
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75 "name": "Any base",
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76 "equals": "ACGT"
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77 }, {
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78 "symbol": "V",
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79 "name": "Not T",
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80 "equals": "ACG"
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81 }, {
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82 "symbol": "H",
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83 "name": "Not G",
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84 "equals": "ACT"
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85 }, {
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86 "symbol": "D",
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87 "name": "Not C",
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88 "equals": "AGT"
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89 }, {
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90 "symbol": "B",
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91 "name": "Not A",
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92 "equals": "CGT"
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93 }, {
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94 "symbol": "M",
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95 "name": "Amino",
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96 "equals": "AC"
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97 }, {
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98 "symbol": "R",
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99 "name": "Purine",
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100 "equals": "AG"
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