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author greg
date Mon, 11 Jan 2016 13:33:25 -0500
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1 <!DOCTYPE HTML>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <title>MEME</title>
6 <script>
7 // @JSON_VAR data
8 var data = {
9 "program": "MEME",
10 "version": "4.11.0",
11 "release": "Thu Nov 26 17:48:49 2015 +1000",
12 "stop_reason": "Stopped because requested number of motifs (1) found.",
13 "cmd": [
14 "meme",
15 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat",
16 "-o",
17 "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1912/dataset_2530_files",
18 "-nostatus"
19 ],
20 "options": {
21 "mod": "zoops",
22 "revcomp": false,
23 "nmotifs": 1,
24 "minw": 8,
25 "maxw": 50,
26 "minsites": 2,
27 "maxsites": 30,
28 "wnsites": 0.8,
29 "spmap": "pam",
30 "spfuzz": 120,
31 "maxwords": -1,
32 "prior": "megap",
33 "b": 7500,
34 "maxiter": 50,
35 "distance": 1e-05,
36 "wg": 11,
37 "ws": 1,
38 "noendgaps": false,
39 "substring": true
40 },
41 "alphabet": {
42 "name": "Protein",
43 "like": "protein",
44 "ncore": 20,
45 "symbols": [
46 {
47 "symbol": "A",
48 "name": "Alanine",
49 "colour": "0000CC"
50 }, {
51 "symbol": "C",
52 "name": "Cysteine",
53 "colour": "0000CC"
54 }, {
55 "symbol": "D",
56 "name": "Aspartic acid",
57 "colour": "FF00FF"
58 }, {
59 "symbol": "E",
60 "name": "Glutamic acid",
61 "colour": "FF00FF"
62 }, {
63 "symbol": "F",
64 "name": "Phenylalanine",
65 "colour": "0000CC"
66 }, {
67 "symbol": "G",
68 "name": "Glycine",
69 "colour": "FFB300"
70 }, {
71 "symbol": "H",
72 "name": "Histidine",
73 "colour": "FFCCCC"
74 }, {
75 "symbol": "I",
76 "name": "Isoleucine",
77 "colour": "0000CC"
78 }, {
79 "symbol": "K",
80 "name": "Lysine",
81 "colour": "CC0000"
82 }, {
83 "symbol": "L",
84 "name": "Leucine",
85 "colour": "0000CC"
86 }, {
87 "symbol": "M",
88 "name": "Methionine",
89 "colour": "0000CC"
90 }, {
91 "symbol": "N",
92 "name": "Asparagine",
93 "colour": "008000"
94 }, {
95 "symbol": "P",
96 "name": "Proline",
97 "colour": "FFFF00"
98 }, {
99 "symbol": "Q",
100 "name": "Glutamine",