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1 <!DOCTYPE HTML>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <title>MEME</title>
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6 <script>
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7 // @JSON_VAR data
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8 var data = {
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9 "program": "MEME",
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10 "version": "4.11.0",
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11 "release": "Thu Nov 26 17:48:49 2015 +1000",
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12 "stop_reason": "Stopped because requested number of motifs (1) found.",
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13 "cmd": [
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14 "meme",
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15 "/Users/gvk/work/git_workspace/galaxy/database/files/002/dataset_2490.dat",
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16 "-o",
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17 "/Users/gvk/work/git_workspace/galaxy/database/job_working_directory/001/1912/dataset_2530_files",
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18 "-nostatus"
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19 ],
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20 "options": {
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21 "mod": "zoops",
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22 "revcomp": false,
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23 "nmotifs": 1,
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24 "minw": 8,
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25 "maxw": 50,
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26 "minsites": 2,
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27 "maxsites": 30,
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28 "wnsites": 0.8,
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29 "spmap": "pam",
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30 "spfuzz": 120,
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31 "maxwords": -1,
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32 "prior": "megap",
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33 "b": 7500,
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34 "maxiter": 50,
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35 "distance": 1e-05,
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36 "wg": 11,
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37 "ws": 1,
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38 "noendgaps": false,
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39 "substring": true
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40 },
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41 "alphabet": {
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42 "name": "Protein",
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43 "like": "protein",
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44 "ncore": 20,
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45 "symbols": [
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46 {
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47 "symbol": "A",
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48 "name": "Alanine",
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49 "colour": "0000CC"
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50 }, {
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51 "symbol": "C",
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52 "name": "Cysteine",
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53 "colour": "0000CC"
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54 }, {
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55 "symbol": "D",
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56 "name": "Aspartic acid",
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57 "colour": "FF00FF"
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58 }, {
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59 "symbol": "E",
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60 "name": "Glutamic acid",
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61 "colour": "FF00FF"
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62 }, {
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63 "symbol": "F",
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64 "name": "Phenylalanine",
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65 "colour": "0000CC"
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66 }, {
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67 "symbol": "G",
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68 "name": "Glycine",
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69 "colour": "FFB300"
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70 }, {
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71 "symbol": "H",
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72 "name": "Histidine",
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73 "colour": "FFCCCC"
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74 }, {
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75 "symbol": "I",
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76 "name": "Isoleucine",
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77 "colour": "0000CC"
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78 }, {
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79 "symbol": "K",
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80 "name": "Lysine",
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81 "colour": "CC0000"
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82 }, {
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83 "symbol": "L",
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84 "name": "Leucine",
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85 "colour": "0000CC"
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86 }, {
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87 "symbol": "M",
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88 "name": "Methionine",
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89 "colour": "0000CC"
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90 }, {
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91 "symbol": "N",
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92 "name": "Asparagine",
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93 "colour": "008000"
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94 }, {
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95 "symbol": "P",
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96 "name": "Proline",
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97 "colour": "FFFF00"
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98 }, {
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99 "symbol": "Q",
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100 "name": "Glutamine",
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