Mercurial > repos > greg > ideas_genome_tracks
changeset 21:5201e615dd7f draft
Uploaded
| author | greg |
|---|---|
| date | Mon, 20 Nov 2017 14:48:21 -0500 |
| parents | 696e435f5607 |
| children | a3740127fc5e |
| files | ideas_genome_tracks.xml |
| diffstat | 1 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/ideas_genome_tracks.xml Mon Nov 20 10:34:37 2017 -0500 +++ b/ideas_genome_tracks.xml Mon Nov 20 14:48:21 2017 -0500 @@ -7,9 +7,11 @@ <requirement type="package" version="332">ucsc-bedtobigbed</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ -#import string +#import re #set dbkey = None -#set sanitized_hub_name = $hub_name.translate(dict.fromkeys(map(ord, whitespace))) +#set sanitized_hub_name = $re.sub('\s+', '', str($hub_name), flags=re.UNICODE) +#set sanitized_long_label = str($long_label)[:79] +#set sanitized_short_label = str($short_label)[:16] #if str($__user__.email) == 'None': #set email = "foo@bar.net" #else: @@ -36,14 +38,13 @@ -b $dbkey -c '$chromInfo' -e '$email' --l '$long_label[:79]' --n '$sanitized_hub_name' +-l '$sanitized_long_label' +-n '$hub_name' -p '$input_dir_para' -q '$input_dir_state' --s '$short_label[:16]' +-s '$sanitized_short_label' -w '$output_trackhub' -x '$output_trackhub.files_path' -&>/dev/null ]]></command> <inputs> <param name="input" format="txt" type="data_collection" collection_type="list" label="IDEAS files" />