Mercurial > repos > greg > fasta_extract

changeset 9:67171d711b34 draft

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Uploaded
author greg
date Sun, 10 Jan 2016 14:35:47 -0500
parents b740d423ce07
children a3f52920020b
files fasta_extract.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/fasta_extract.xml	Sun Jan 10 14:25:59 2016 -0500
+++ b/fasta_extract.xml	Sun Jan 10 14:35:47 2016 -0500
@@ -13,11 +13,11 @@
                 --input "$i" ${i.hid}
             #end for
             #if str($reference_genome_cond.reference_genome_source) == "cached":
-                #set genome_file = "$reference_genome_cond.reference_genome.fields.path"
+                #set genome_file = $reference_genome_cond.reference_genome.fields.path
             #else:
-                #set genome_file = "$reference_genome_cond.reference_genome"
+                #set genome_file = $reference_genome_cond.reference_genome
             #end if
-            --genome_file $genome_file
+            --genome_file "$genome_file"
             --subtract_from_start $subtract_from_start
             --add_to_end $add_to_end
             --extend_existing $extend_existing