# HG changeset patch
# User greg
# Date 1452454547 18000
# Node ID 67171d711b345d5f1c59c2eac63cc83aa57046d3
# Parent  b740d423ce0749730fe6cca3e5d2e7bc13065bf1
Uploaded

diff -r b740d423ce07 -r 67171d711b34 fasta_extract.xml
--- a/fasta_extract.xml	Sun Jan 10 14:25:59 2016 -0500
+++ b/fasta_extract.xml	Sun Jan 10 14:35:47 2016 -0500
@@ -13,11 +13,11 @@
                 --input "$i" ${i.hid}
             #end for
             #if str($reference_genome_cond.reference_genome_source) == "cached":
-                #set genome_file = "$reference_genome_cond.reference_genome.fields.path"
+                #set genome_file = $reference_genome_cond.reference_genome.fields.path
             #else:
-                #set genome_file = "$reference_genome_cond.reference_genome"
+                #set genome_file = $reference_genome_cond.reference_genome
             #end if
-            --genome_file $genome_file
+            --genome_file "$genome_file"
             --subtract_from_start $subtract_from_start
             --add_to_end $add_to_end
             --extend_existing $extend_existing