changeset 11:173c5c07b2f9 draft

Uploaded
author greg
date Fri, 03 Nov 2017 13:51:40 -0400
parents 5014ba48e15e
children 1467f96db74a
files dmri.py
diffstat 1 files changed, 8 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/dmri.py	Fri Nov 03 13:46:21 2017 -0400
+++ b/dmri.py	Fri Nov 03 13:51:40 2017 -0400
@@ -5,6 +5,7 @@
 import shutil
 
 from dipy.data import fetch_sherbrooke_3shell
+from matplotlib import pyplot
 
 parser = argparse.ArgumentParser()
 parser.add_argument('--input', dest='input', help='Input dataset')
@@ -26,10 +27,10 @@
 # non-weighted (S0s) and diffusion-weighted volumes.
 # Visualize the results using matplotlib.
 axial_middle = data.shape[2] // 2
-plt.figure('Showing the datasets')
-plt.subplot(1, 2, 1).set_axis_off()
-plt.imshow(data[:, :, axial_middle, 0].T, cmap='gray', origin='lower')
-plt.subplot(1, 2, 2).set_axis_off()
-plt.imshow(data[:, :, axial_middle, 10].T, cmap='gray', origin='lower')
-plt.show()
-plt.savefig(args.output, bbox_inches='tight')
+pyplot.figure('Showing the datasets')
+pyplot.subplot(1, 2, 1).set_axis_off()
+pyplot.imshow(data[:, :, axial_middle, 0].T, cmap='gray', origin='lower')
+pyplot.subplot(1, 2, 2).set_axis_off()
+pyplot.imshow(data[:, :, axial_middle, 10].T, cmap='gray', origin='lower')
+pyplot.show()
+pyplot.savefig(args.output, bbox_inches='tight')