Mercurial > repos > greg > diffusion_signal_reconstruction

changeset 12:361bdd5fa8bc draft default tip

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Uploaded
author greg
date Thu, 30 Nov 2017 09:02:37 -0500
parents bca3ded6d5cc
children
files diffusion_signal_reconstruction.py
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/diffusion_signal_reconstruction.py	Thu Nov 30 08:56:23 2017 -0500
+++ b/diffusion_signal_reconstruction.py	Thu Nov 30 09:02:37 2017 -0500
@@ -77,23 +77,23 @@
 fa_img = nibabel.Nifti1Image(fa.astype(numpy.float32), img.affine)
 nibabel.save(fa_img, 'output_fa.nii')
 shutil.move('output_fa.nii', args.output_nifti1_fa)
-move_directory_files(input_dir, args.output_nifti1_fa_files_path)
+move_directory_files(input_dir, args.output_nifti1_fa_files_path, copy=True)
 
 evecs_img = nibabel.Nifti1Image(tenfit.evecs.astype(numpy.float32), img.affine)
 nibabel.save(evecs_img, 'output_evecs.nii')
 shutil.move('output_evecs.nii', args.output_nifti1_evecs)
-move_directory_files(input_dir, args.output_nifti1_evecs_files_path)
+move_directory_files(input_dir, args.output_nifti1_evecs_files_path, copy=True)
 
 md1 = dti.mean_diffusivity(tenfit.evals)
 nibabel.save(nibabel.Nifti1Image(md1.astype(numpy.float32), img.affine), 'output_md.nii')
 shutil.move('output_md.nii', args.output_nifti1_md)
-move_directory_files(input_dir, args.output_nifti1_md_files_path)
+move_directory_files(input_dir, args.output_nifti1_md_files_path, copy=True)
 
 fa = numpy.clip(fa, 0, 1)
 rgb = color_fa(fa, tenfit.evecs)
 nibabel.save(nibabel.Nifti1Image(numpy.array(255 * rgb, 'uint8'), img.affine), 'output_rgb.nii')
 shutil.move('output_rgb.nii', args.output_nifti1_rgb)
-move_directory_files(input_dir, args.output_nifti1_rgb_files_path)
+move_directory_files(input_dir, args.output_nifti1_rgb_files_path, copy=True)
 
 sphere = get_sphere('symmetric724')
 ren = fvtk.ren()