Mercurial > repos > greg > coral_multilocus_genotype
changeset 1:a5716c317919 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 18 Jul 2019 07:58:01 -0400 |
| parents | dee5a84c0980 |
| children | dea15dc040ed |
| files | coral_multilocus_genotype.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/coral_multilocus_genotype.xml Thu Jul 18 07:54:00 2019 -0400 +++ b/coral_multilocus_genotype.xml Thu Jul 18 07:58:01 2019 -0400 @@ -80,11 +80,11 @@ **Plots** - *ibs default* - identity-by-state analysis using the default clustering (Z threshold15, outlier detection 5) based on dissimilarity matrix of the samples with colors of terminal branches representing the identified groups. - *ibs region* - identity-by-state analysis using the collection region information to identify clusters based on dissimilarity matrix of samples with colors of terminal branches representing the collection region. - *missing data* - percent of missing allele calls for each sample. - *mlg map* - geographic map of the samples colored by their multilocus genotype id, - *Percent Breakdown* - average breakdown allele assignments across all samples and per sample. + * **ibs default** - identity-by-state analysis using the default clustering (Z threshold15, outlier detection 5) based on dissimilarity matrix of the samples with colors of terminal branches representing the identified groups. + * **ibs region** - identity-by-state analysis using the collection region information to identify clusters based on dissimilarity matrix of samples with colors of terminal branches representing the collection region. + * **missing data** - percent of missing allele calls for each sample. + * **mlg map** - geographic map of the samples colored by their multilocus genotype id, + * **percent breakdown** - average breakdown allele assignments across all samples and per sample. **Table Data** - Data files containing all of the information for updating the stag database.