Mercurial > repos > greg > assembly_post_processor
changeset 83:ed2cc7e78e9b draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 13 Oct 2017 14:07:55 -0400 |
| parents | 8378d126347a |
| children | b1102f939fdd |
| files | assembly_post_processor.py |
| diffstat | 1 files changed, 3 insertions(+), 0 deletions(-) [+] |
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--- a/assembly_post_processor.py Thu Oct 12 10:06:25 2017 -0400 +++ b/assembly_post_processor.py Fri Oct 13 14:07:55 2017 -0400 @@ -20,6 +20,7 @@ parser.add_argument('--output_cleaned_nr_pep', dest='output_cleaned_nr_pep', default=None, help='Output transcripts.cleaned.nr.pep') parser.add_argument('--output_cleaned_pep', dest='output_cleaned_pep', help='Output transcripts.cleaned.pep') parser.add_argument('--output_pep', dest='output_pep', help='Output transcripts.pep') +parser.add_argument('--output_targeted_gene_families_stats', dest='output_targeted_gene_families_stats', default=None, help='Targeted gene families statistics') parser.add_argument('--prediction_method', dest='prediction_method', help='Coding regions prediction method') parser.add_argument('--scaffold', dest='scaffold', default=None, help='Gene family scaffold') parser.add_argument('--score_matrices', dest='score_matrices', default=None, help='Scores matrices') @@ -61,3 +62,5 @@ shutil.move(os.path.join(OUTPUT_DIR, 'transcripts.cleaned.nr.pep'), args.output_cleaned_nr_pep) shutil.move(os.path.join(OUTPUT_DIR, 'transcripts.cleaned.pep'), args.output_cleaned_pep) shutil.move(os.path.join(OUTPUT_DIR, 'transcripts.pep'), args.output_pep) +if args.output_targeted_gene_families_stats is not None: + shutil.move(os.path.join(OUTPUT_DIR, 'targeted_gene_family_assemblies.stats'), args.output_targeted_gene_families_stats)