Mercurial > repos > greg > assembly_post_processor

changeset 91:a9571ff827b4 draft

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Uploaded
author greg
date Thu, 26 Oct 2017 09:17:25 -0400
parents 7dc44a577c88
children 55024e4d84d4
files assembly_post_processor.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/assembly_post_processor.xml	Thu Oct 26 07:54:33 2017 -0400
+++ b/assembly_post_processor.xml	Thu Oct 26 09:17:25 2017 -0400
@@ -21,7 +21,9 @@
         --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path'
         --method '$target_gene_family_assembly_cond.method'
         --gap_trimming $target_gene_family_assembly_cond.gap_trimming
-        --min_coverage $target_gene_family_assembly_cond.min_coverage
+        #if $target_gene_family_assembly_cond.min_coverage > 0:
+            --min_coverage $target_gene_family_assembly_cond.min_coverage
+        #end if
     #end if
     #if str($options_type.strand_specific) == 'yes':
         --strand_specific true
@@ -149,7 +151,6 @@
             <param name="scaffold" value="22Gv1.1"/>
             <param name="method" value="orthomcl"/>
             <param name="dereplicate" value="yes"/>
-            <param name="min_coverage" value="0"/>
             <output_collection name="output_targeted_gene_families" type="list">
                 <element name="752.faa" file="752.faa" ftype="fasta"/>
                 <element name="752.fasta" file="752.fasta" ftype="fasta"/>