# HG changeset patch
# User greg
# Date 1509023845 14400
# Node ID a9571ff827b48902056461dc7530d7c9c72ad798
# Parent  7dc44a577c88464aadd7f7d0a104eba26626f76c
Uploaded

diff -r 7dc44a577c88 -r a9571ff827b4 assembly_post_processor.xml
--- a/assembly_post_processor.xml	Thu Oct 26 07:54:33 2017 -0400
+++ b/assembly_post_processor.xml	Thu Oct 26 09:17:25 2017 -0400
@@ -21,7 +21,9 @@
         --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path'
         --method '$target_gene_family_assembly_cond.method'
         --gap_trimming $target_gene_family_assembly_cond.gap_trimming
-        --min_coverage $target_gene_family_assembly_cond.min_coverage
+        #if $target_gene_family_assembly_cond.min_coverage > 0:
+            --min_coverage $target_gene_family_assembly_cond.min_coverage
+        #end if
     #end if
     #if str($options_type.strand_specific) == 'yes':
         --strand_specific true
@@ -149,7 +151,6 @@
             <param name="scaffold" value="22Gv1.1"/>
             <param name="method" value="orthomcl"/>
             <param name="dereplicate" value="yes"/>
-            <param name="min_coverage" value="0"/>
             <output_collection name="output_targeted_gene_families" type="list">
                 <element name="752.faa" file="752.faa" ftype="fasta"/>
                 <element name="752.fasta" file="752.fasta" ftype="fasta"/>