Mercurial > repos > greg > assembly_post_processor
changeset 82:8378d126347a draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 12 Oct 2017 10:06:25 -0400 |
| parents | 1a216a9837c7 |
| children | ed2cc7e78e9b |
| files | assembly_post_processor.xml |
| diffstat | 1 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/assembly_post_processor.xml Thu Oct 12 09:52:45 2017 -0400 +++ b/assembly_post_processor.xml Thu Oct 12 10:06:25 2017 -0400 @@ -90,7 +90,7 @@ </inputs> <outputs> <collection name="output_targeted_gene_families" type="list" label="Targeted gene families: ${tool.name} on ${on_string}"> - <discover_datasets pattern="__name__" directory="assemblyPostProcessing_dir/targeted_gene_families" format="fasta" /> + <discover_datasets pattern="__name__" directory="assemblyPostProcessing_dir/targeted_gene_family_assemblies" format="fasta" /> <filter>options_type['options_type_selector'] == 'advanced' and options_type['target_gene_family_assembly_cond']['target_gene_family_assembly'] == 'yes'</filter> </collection> <data name="output_pep" format="fasta" label="transcripts.pep: ${tool.name} on ${on_string}"/> @@ -135,9 +135,11 @@ <param name="scaffold" value="22Gv1.1"/> <param name="method" value="orthomcl"/> <param name="dereplicate" value="yes"/> - <!-- - <output name="output_pttgf" file="output.pttgf" ftype="pttgf"/> - --> + <output_collection name="output_targeted_gene_families" type="list"> + <element name="752.faa" file="752.faa" ftype="fasta"/> + <element name="752.fasta" file="752.fasta" ftype="fasta"/> + <element name="752.fna" file="752.fna" ftype="fasta"/> + </output_collection> <output name="output_cds" file="transcripts_tgf.cds" ftype="fasta"/> <output name="output_cleaned_cds" file="transcripts.cleaned_tgf.cds" ftype="fasta"/> <output name="output_cleaned_nr_cds" file="transcripts_tgf.cleaned.nr.cds" ftype="fasta"/>