Mercurial > repos > greg > assembly_post_processor
changeset 101:7ca8ab9a46e9 draft
Uploaded
author | greg |
---|---|
date | Thu, 07 Dec 2017 10:28:43 -0500 |
parents | e0db1f719af1 |
children | 62df33ce7eaa |
files | assembly_post_processor.xml |
diffstat | 1 files changed, 4 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/assembly_post_processor.xml Mon Oct 30 08:51:22 2017 -0400 +++ b/assembly_post_processor.xml Thu Dec 07 10:28:43 2017 -0500 @@ -48,6 +48,9 @@ && mv $output_dir/transcripts.cleaned.nr.pep '$output_cleaned_nr_pep' #end if #end if +&& if [[ $? -ne 0 ]]; then + cat proc.log >&2; +fi ]]></command> <inputs> <param name="input" format="fasta" type="data" label="Transcriptome assembly fasta file"/> @@ -168,7 +171,7 @@ assembled transcripts into putative coding sequences and their corresponding amino acid translations and optionally assigns transcripts to circumscribed gene families ("orthogroups")[2]. After transcripts have been assigned to gene families, overlapping contigs can be identified and merged to reduce fragmentation in the -de novo assembly. +de novo assembly. -----