# HG changeset patch
# User greg
# Date 1512660523 18000
# Node ID 7ca8ab9a46e9b63ede70331729aed958d74c96c9
# Parent  e0db1f719af1fafe09ab6c5bc3c74073639eef42
Uploaded

diff -r e0db1f719af1 -r 7ca8ab9a46e9 assembly_post_processor.xml
--- a/assembly_post_processor.xml	Mon Oct 30 08:51:22 2017 -0400
+++ b/assembly_post_processor.xml	Thu Dec 07 10:28:43 2017 -0500
@@ -48,6 +48,9 @@
         && mv $output_dir/transcripts.cleaned.nr.pep '$output_cleaned_nr_pep'
     #end if
 #end if
+&& if [[ $? -ne 0 ]]; then
+  cat proc.log >&2;
+fi
     ]]></command>
     <inputs>
         <param name="input" format="fasta" type="data" label="Transcriptome assembly fasta file"/>
@@ -168,7 +171,7 @@
 assembled transcripts into putative coding sequences and their corresponding amino acid translations and
 optionally assigns transcripts to circumscribed gene families ("orthogroups")[2].  After transcripts have been
 assigned to gene families, overlapping contigs can be identified and merged to reduce fragmentation in the
-de novo assembly.  
+de novo assembly.
 
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