Mercurial > repos > greg > assembly_post_processor

changeset 9:5a0a049d11aa draft

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Uploaded
author greg
date Tue, 31 Jan 2017 11:23:32 -0500
parents e5110df5314b
children db0c2baf176f
files assembly_post_processor.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/assembly_post_processor.xml	Tue Jan 31 11:10:35 2017 -0500
+++ b/assembly_post_processor.xml	Tue Jan 31 11:23:32 2017 -0500
@@ -22,7 +22,7 @@
             #if str($options_type.options_type_selector) == 'advanced':
                 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
                     --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups'
-                    --scaffold_dir '${GALAXY_DATA_MANAGER_DATA_PATH}/plant_tribes/scaffolds'
+                    --scaffold_dir '$options_type.target_gene_family_assembly_cond.scaffold.path'
                     --scaffold '$options_type.target_gene_family_assembly_cond.scaffold'
                     --method '$options_type.target_gene_family_assembly_cond.method'
                 #end if