# HG changeset patch
# User greg
# Date 1485879812 18000
# Node ID 5a0a049d11aa693f5bc7eec7f8e5a7105f85afeb
# Parent  e5110df5314bffd119a52e428368d1b917aaef3c
Uploaded

diff -r e5110df5314b -r 5a0a049d11aa assembly_post_processor.xml
--- a/assembly_post_processor.xml	Tue Jan 31 11:10:35 2017 -0500
+++ b/assembly_post_processor.xml	Tue Jan 31 11:23:32 2017 -0500
@@ -22,7 +22,7 @@
             #if str($options_type.options_type_selector) == 'advanced':
                 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
                     --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups'
-                    --scaffold_dir '${GALAXY_DATA_MANAGER_DATA_PATH}/plant_tribes/scaffolds'
+                    --scaffold_dir '$options_type.target_gene_family_assembly_cond.scaffold.path'
                     --scaffold '$options_type.target_gene_family_assembly_cond.scaffold'
                     --method '$options_type.target_gene_family_assembly_cond.method'
                 #end if