Mercurial > repos > greg > assembly_post_processor
comparison assembly_post_processor.xml @ 56:3d2aff5a0c07 draft
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author | greg |
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date | Mon, 22 May 2017 10:16:01 -0400 |
parents | 5c221f721b95 |
children | 5fb9c4fc7c00 |
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55:5c221f721b95 | 56:3d2aff5a0c07 |
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11 --prediction_method $prediction_method_cond.prediction_method | 11 --prediction_method $prediction_method_cond.prediction_method |
12 #if str($prediction_method_cond.prediction_method) == 'estscan': | 12 #if str($prediction_method_cond.prediction_method) == 'estscan': |
13 --score_matrices '$score_matrices' | 13 --score_matrices '$score_matrices' |
14 #end if | 14 #end if |
15 #if str($options_type.options_type_selector) == 'advanced': | 15 #if str($options_type.options_type_selector) == 'advanced': |
16 #if str($) == 'yes': | 16 #set target_gene_family_assembly_cond = $options_type.target_gene_family_assembly_cond |
17 #set target_gene_family_assembly_cond = $options_type.target_gene_family_assembly_cond | 17 #if str($target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes': |
18 --gene_family_search '$target_gene_family_assembly_cond.orthogroups' | 18 --gene_family_search '$target_gene_family_assembly_cond.orthogroups' |
19 --output_pttgf $output_pttgf | 19 --output_pttgf $output_pttgf |
20 --output_pttgf_dir $output_pttgf.files_path | 20 --output_pttgf_dir $output_pttgf.files_path |
21 --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path' | 21 --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path' |
22 --method '$target_gene_family_assembly_cond.method' | 22 --method '$target_gene_family_assembly_cond.method' |