Mercurial > repos > greg > assembly_post_processor

diff assembly_post_processor.xml @ 56:3d2aff5a0c07 draft

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Uploaded
author greg
date Mon, 22 May 2017 10:16:01 -0400
parents 5c221f721b95
children 5fb9c4fc7c00
line wrap: on
line diff
--- a/assembly_post_processor.xml	Mon May 22 10:12:00 2017 -0400
+++ b/assembly_post_processor.xml	Mon May 22 10:16:01 2017 -0400
@@ -13,8 +13,8 @@
                 --score_matrices '$score_matrices'
             #end if
             #if str($options_type.options_type_selector) == 'advanced':
-                #if str($) == 'yes':
-                    #set target_gene_family_assembly_cond = $options_type.target_gene_family_assembly_cond
+                #set target_gene_family_assembly_cond = $options_type.target_gene_family_assembly_cond
+                #if str($target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
                     --gene_family_search '$target_gene_family_assembly_cond.orthogroups'
                     --output_pttgf $output_pttgf
                     --output_pttgf_dir $output_pttgf.files_path