Mercurial > repos > greg > affy_ids_for_genotyping
changeset 3:8ef5b9925a61 draft default tip
Uploaded
| author | greg |
|---|---|
| date | Thu, 15 Aug 2019 09:25:45 -0400 |
| parents | a70f103aed16 |
| children | |
| files | .shed.yml affy_ids_for_genotyping.xml |
| diffstat | 2 files changed, 13 insertions(+), 4 deletions(-) [+] |
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--- a/.shed.yml Tue Dec 04 14:58:07 2018 -0500 +++ b/.shed.yml Thu Aug 15 09:25:45 2019 -0400 @@ -2,7 +2,7 @@ owner: greg description: | Contains a tool that extracts the Affymetrix ids from a VCF file for genotyping. -homepage_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/corals/affy_ids_for_genotyping +homepage_url: http://baumslab.org long_description: | Contains a tool that extracts the Affymetrix ids from a VCF file for genotyping. remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/corals/affy_ids_for_genotyping
--- a/affy_ids_for_genotyping.xml Tue Dec 04 14:58:07 2018 -0500 +++ b/affy_ids_for_genotyping.xml Thu Aug 15 09:25:45 2019 -0400 @@ -21,10 +21,19 @@ <help> **What it does** -Generates a file that contains the Affymetrix identifiers that will be combined with additional data to -generate the genotype populatiuon information for use as input to the multilocus_genotype tool. This tool -can be used only within a Galaxy instance that includes the complementary corals (stag) database. +Extracts information from a VCF file that contains Affymetrix identifiers and produces a file that contains +a subset of the identifiers combined with additional data to generate the genotype populatiuon information +for use as input to the Corals Multilocus Genotype tool. This tool must be able to access the corals (stag) +database. </help> <citations> + <citation type="bibtex"> + @misc{None, + journal = {None}, + author = {Baums I}, + title = {Manuscript in preparation}, + year = {None}, + url = {http://baumslab.org} + </citation> </citations> </tool>