|
1
|
1 <macros>
|
|
|
2 <token name="@WRAPPER_VERSION@">1.9</token>
|
|
|
3 <xml name="citation1">
|
|
|
4 <citation type="doi">10.1093/bioinformatics/btp352</citation>
|
|
|
5 </xml>
|
|
|
6 <token name="@PREPARE_ENV@">
|
|
|
7 <![CDATA[
|
|
|
8 export BCFTOOLS_PLUGINS=\$(dirname `which bcftools`)/../libexec/bcftools;
|
|
|
9 ]]>
|
|
|
10 </token>
|
|
|
11 <token name="@THREADS@">
|
|
|
12 --threads \${GALAXY_SLOTS:-4}
|
|
|
13 </token>
|
|
|
14 <xml name="vcf_output">
|
|
|
15 <data name="output" format="vcf">
|
|
|
16 <change_format>
|
|
|
17 <when input="output_type" value="b" format="bcf" />
|
|
|
18 <when input="output_type" value="u" format="bcf" />
|
|
|
19 <when input="output_type" value="z" format="vcf_bgzip" />
|
|
|
20 <when input="output_type" value="v" format="vcf" />
|
|
|
21 </change_format>
|
|
|
22 </data>
|
|
|
23 </xml>
|
|
|
24 </macros>
|
|
|
25
|
