Mercurial > repos > grau > dimont
changeset 17:2ea4f3401930 draft
Uploaded
| author | grau |
|---|---|
| date | Fri, 08 Nov 2013 09:09:58 -0500 |
| parents | afa37a53c305 |
| children | 6c69a38cd0e9 |
| files | DimontDataExtractor.xml DimontPredictorWeb.jar DimontPredictorWeb.xml DimontWeb.jar DimontWeb.xml test-data/.DS_Store |
| diffstat | 6 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/DimontDataExtractor.xml Fri Nov 08 02:29:07 2013 -0500 +++ b/DimontDataExtractor.xml Fri Nov 08 09:09:58 2013 -0500 @@ -1,5 +1,5 @@ <tool id="DimontDataExtractor" name="Dimont Data Extractor" version="0.1"> -<description>Extracts genomic regions specified in a BED-like file format in the annotated FastA format as required by Dimont</description> +<description>prepares data in the format required by Dimont</description> <command interpreter="perl">extract_data_single_galaxy.pl $genomefa $regions $chromcol $startcol $seccol $seccoord $width $statcol $extracted</command> <inputs> <param type="data" format="bed,gtf,txt,tabular" name="regions" label="Genomic regions" value="" optional="false" help="The genomic regions to be extracted in a BED-like file format, e.g., BED, GTF, narrowPeak." />
--- a/DimontPredictorWeb.xml Fri Nov 08 02:29:07 2013 -0500 +++ b/DimontPredictorWeb.xml Fri Nov 08 09:09:58 2013 -0500 @@ -1,5 +1,5 @@ <tool id="DimontPredictor" name="DimontPredictor" version="0.1" force_history_refresh="true"> -<description>DimontPredictor for predicting binding sites using a Dimont model</description> +<description>for predicting binding sites using a Dimont model</description> <command>java -Xms256M -Xmx2G -jar \$JAR_PATH/DimontPredictorWeb.jar --run $script_file $summary $summary.id $__new_file_path__ $summary.extra_files_path</command> <inputs> <param type="text" size="40" name="DimontPredictor_jobname" label="Job name" value="" optional="true" help="Please enter a name for your job that should be used in the history (optional)">
--- a/DimontWeb.xml Fri Nov 08 02:29:07 2013 -0500 +++ b/DimontWeb.xml Fri Nov 08 09:09:58 2013 -0500 @@ -1,5 +1,5 @@ <tool id="Dimont" name="Dimont" version="0.1" force_history_refresh="true"> -<description>Dimont, a universal tool for de-novo motif discovery.</description> +<description>- a universal tool for de-novo motif discovery.</description> <command>java -Xms256M -Xmx2G -jar \$JAR_PATH/DimontWeb.jar --run $script_file $summary $summary.id $__new_file_path__ $summary.extra_files_path</command> <inputs> <param type="text" size="40" name="Dimont_jobname" label="Job name" value="" optional="true" help="Please enter a name for your job that should be used in the history (optional)">