# HG changeset patch
# User grau
# Date 1383919798 18000
# Node ID 2ea4f34019304b938284d288851778251ee15353
# Parent  afa37a53c3057823bc0eed218d40ad7f6611f1f3
Uploaded

diff -r afa37a53c305 -r 2ea4f3401930 DimontDataExtractor.xml
--- a/DimontDataExtractor.xml	Fri Nov 08 02:29:07 2013 -0500
+++ b/DimontDataExtractor.xml	Fri Nov 08 09:09:58 2013 -0500
@@ -1,5 +1,5 @@
 <tool id="DimontDataExtractor" name="Dimont Data Extractor" version="0.1">
-<description>Extracts genomic regions specified in a BED-like file format in the annotated FastA format as required by Dimont</description>
+<description>prepares data in the format required by Dimont</description>
 <command interpreter="perl">extract_data_single_galaxy.pl $genomefa $regions $chromcol $startcol $seccol $seccoord $width $statcol $extracted</command>
 <inputs>
 	<param type="data" format="bed,gtf,txt,tabular" name="regions" label="Genomic regions" value="" optional="false" help="The genomic regions to be extracted in a BED-like file format, e.g., BED, GTF, narrowPeak." />
diff -r afa37a53c305 -r 2ea4f3401930 DimontPredictorWeb.jar
Binary file DimontPredictorWeb.jar has changed
diff -r afa37a53c305 -r 2ea4f3401930 DimontPredictorWeb.xml
--- a/DimontPredictorWeb.xml	Fri Nov 08 02:29:07 2013 -0500
+++ b/DimontPredictorWeb.xml	Fri Nov 08 09:09:58 2013 -0500
@@ -1,5 +1,5 @@
 <tool id="DimontPredictor" name="DimontPredictor" version="0.1" force_history_refresh="true">
-<description>DimontPredictor for predicting binding sites using a Dimont model</description>
+<description>for predicting binding sites using a Dimont model</description>
 <command>java -Xms256M -Xmx2G -jar \$JAR_PATH/DimontPredictorWeb.jar --run $script_file $summary $summary.id $__new_file_path__ $summary.extra_files_path</command>
 <inputs>
 <param type="text" size="40" name="DimontPredictor_jobname" label="Job name" value="" optional="true" help="Please enter a name for your job that should be used in the history (optional)">
diff -r afa37a53c305 -r 2ea4f3401930 DimontWeb.jar
Binary file DimontWeb.jar has changed
diff -r afa37a53c305 -r 2ea4f3401930 DimontWeb.xml
--- a/DimontWeb.xml	Fri Nov 08 02:29:07 2013 -0500
+++ b/DimontWeb.xml	Fri Nov 08 09:09:58 2013 -0500
@@ -1,5 +1,5 @@
 <tool id="Dimont" name="Dimont" version="0.1" force_history_refresh="true">
-<description>Dimont, a universal tool for de-novo motif discovery.</description>
+<description>- a universal tool for de-novo motif discovery.</description>
 <command>java -Xms256M -Xmx2G -jar \$JAR_PATH/DimontWeb.jar --run $script_file $summary $summary.id $__new_file_path__ $summary.extra_files_path</command>
 <inputs>
 <param type="text" size="40" name="Dimont_jobname" label="Job name" value="" optional="true" help="Please enter a name for your job that should be used in the history (optional)">
diff -r afa37a53c305 -r 2ea4f3401930 test-data/.DS_Store
Binary file test-data/.DS_Store has changed