changeset 22:a25640ae36df draft

Deleted selected files

--- a/viz.xml	Wed Oct 28 08:16:26 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,49 +0,0 @@
-<tool id="viz_tool" name="Viz_tool: After Deseq2" version="0.1.0">
-  <description>for each sequence in a file</description>
-  <requirements>
-    <requirement type="package" version="1.7">fpdf</requirement>
-    <requirement type="package" version="3.7.4">python</requirement>
-    <requirement type="package" version="1.17.3">numpy</requirement>
-    <requirement type="package" version="3.1.2">matplotlib</requirement>
-    <requirement type="package" version="1.0.3">pandas</requirement>
-  </requirements>
-  <command>
-    #if $stats.choice == "1":
-      python $__tool_directory__/viz_ultra.py -in $input_file -p_value "$stats.pvalue" -fc $log2fc -top $top_mirna -tool_dir $__tool_directory__ -statistic "$stats.choice" -diff_tool "$tool"
-    #else:
-      python $__tool_directory__/viz_ultra.py -in $input_file -p_value "$stats.padj" -fc $log2fc -top $top_mirna -tool_dir $__tool_directory__ -statistic "$stats.choice" -diff_tool "$tool"
-    #end if
-  </command>
-  <inputs>
-    <param name="tool" type="select" label="File comes from" help="Choose the tool which generates the input file.">
-      <option value="1" selected="true">Deseq2</option>
-      <option value="2">EdgeR</option>
-    </param>
-    <param name="input_file" type="data" format="tabular" label="Input file" help="File from Deseq2 or EdgeR"/>
-    <param name="top_mirna" type="select" label="Choose the top differentially miRNAs of the analysis" help="Choose the number of top differentially expressed miRNAs.">
-      <option value="10" selected="true">Top 10</option>
-      <option value="20">Top 20</option>
-      <option value="30">Top 30</option>
-      <option value="40">Top 40</option>
-      <option value="50">Top 50</option>
-    </param>
-    <conditional name="stats">
-     <param name="choice" type="select" label="Choose p-value or p-adj" help="asdadadasd">
-      <option value="1" selected="true">Pvalue</option>
-      <option value="2">Padj</option>
-     </param>
-     <when value="1">
-      <param name="pvalue" type="float" min="0" max="1" value="0.05" label="P-value (max value)" help="p-value threshold" />
-     </when>
-     <when value="2">
-      <param name="padj" type="float" min="0" max="1" value="0.05" label="P-adjustment (max value)" help="p-adjustment threshold" />
-     </when>
-    </conditional>
-    <param name="log2fc" type="float" min="0" max="10" value="1" label="Log2FC (Absolute value)" help="Log2FC threshold" />
-  </inputs>
-  <outputs>
-    <data name="File" format="pdf" label="PDF" from_work_dir="$__tool_directory__/report2.pdf" />
-  </outputs>
-  <help>
-  </help>
-</tool>