Mercurial > repos > ggricourt > rp_fba_analysis
changeset 7:12616a516cec draft
"planemo upload for repository https://github.com/brsynth/rpFbaAnalysis commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"
| author | ggricourt |
|---|---|
| date | Wed, 23 Feb 2022 16:38:47 +0000 |
| parents | 1dd60c91c8a2 |
| children | 50253e9abcda |
| files | wrap.xml |
| diffstat | 1 files changed, 23 insertions(+), 1 deletions(-) [+] |
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--- a/wrap.xml Fri Feb 18 15:34:30 2022 +0000 +++ b/wrap.xml Wed Feb 23 16:38:47 2022 +0000 @@ -12,6 +12,11 @@ </stdio> <command detect_errors="exit_code"><![CDATA[ python -m rpfa + #if $reference_cond.reference_select == "history" + --input-model-file '$reference_cond.model' + #else + --input-model-file '$reference_cond.model.fields.path' + #end if --input-model-file '$model' #if $pathway: --input-pathway-file '$pathway' @@ -33,7 +38,24 @@ --output-file '$output_csv' ]]></command> <inputs> - <param name="model" type="data" format="sbml" label="Chassis model file" /> + <conditional name="model_cond"> + <param name="model_select" type="select" label="Select a reference dataset your history or use a built-in?"> + <option value="builtin">Use a built-in reference</option> + <option value="history">Use reference data from the history</option> + </param> + <when value="builtin"> + <param name="model" type="select" label="Select reference data set" help="If a reference data set of interest is not listed, contact the Galaxy administrators"> + <options from_data_table="bigg_model_sbml"> + <filter type="sort_by" column="2"/> + <validator type="no_options" message="No indexes are available for the selected input dataset"/> + </options> + </param> + </when> + <when value="history"> + <param name="model" type="data" format="sbml,xml" label="Chassis model file" /> + </when> + </conditional> + <param name="pathway" type="data" format="sbml" label="Pathway file" optional="True" /> <param name="medium" type="data" format="csv" label="Medium file" optional="True" />