Mercurial > repos > ggricourt > data_manager_bigg

changeset 6:65589e7476b6 draft

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"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"
author ggricourt
date Thu, 24 Feb 2022 11:08:19 +0000
parents 5e6f76507721
children 20146da1a7a6
files data_manager/bigg_model_sbml_fetcher.py
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/bigg_model_sbml_fetcher.py	Thu Feb 24 10:56:46 2022 +0000
+++ b/data_manager/bigg_model_sbml_fetcher.py	Thu Feb 24 11:08:19 2022 +0000
@@ -34,7 +34,7 @@
     data = {}
     try:
         with urlopen(Request(url)) as fod:
-            data = fod.read().encode('utf-8')
+            data = fod.read().decode('utf-8')
         data = ast.literal_evals(data)
     except Exception as e:
         sys.exit(str(e))
@@ -53,7 +53,7 @@
         model_filename = model_id + '.xml'
         path = os.path.abspath(os.path.join(workdir, model_filename))
 
-        url_download(MODEL_DETAIL_URL + model_filename, path)
+        url_download(MODEL_URL + model_filename, path)
         data_manager_entry = {}
         data_manager_entry['value'] = model_id
         data_manager_entry['name'] = get_model_organism(model_id)