comparison data_manager/bigg_model_sbml_fetcher.py @ 6:65589e7476b6 draft

"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 47caed1dd87e80ae226fabb584e9d63d7c86a436-dirty"

5:5e6f76507721

def url_json(url):
    data = {}
    try:
        with urlopen(Request(url)) as fod:
            data = fod.read().encode('utf-8')
        data = ast.literal_evals(data)
    except Exception as e:
        sys.exit(str(e))
    return data

def download_entries(model_ids, workdir):
    for model_id in model_ids:
        model_filename = model_id + '.xml'
        path = os.path.abspath(os.path.join(workdir, model_filename))

        url_download(MODEL_DETAIL_URL + model_filename, path)
        data_manager_entry = {}
        data_manager_entry['value'] = model_id
        data_manager_entry['name'] = get_model_organism(model_id)
        data_manager_entry['path'] = path

6:65589e7476b6

def url_json(url):
    data = {}
    try:
        with urlopen(Request(url)) as fod:
            data = fod.read().decode('utf-8')
        data = ast.literal_evals(data)
    except Exception as e:
        sys.exit(str(e))
    return data

def download_entries(model_ids, workdir):
    for model_id in model_ids:
        model_filename = model_id + '.xml'
        path = os.path.abspath(os.path.join(workdir, model_filename))

        url_download(MODEL_URL + model_filename, path)
        data_manager_entry = {}
        data_manager_entry['value'] = model_id
        data_manager_entry['name'] = get_model_organism(model_id)
        data_manager_entry['path'] = path