Mercurial > repos > ggricourt > data_manager_bigg

annotate data_manager_conf.xml @ 15:44119168868c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
author ggricourt
date Wed, 09 Mar 2022 15:44:01 +0000
parents c1d4f14dc768
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
1 <?xml version="1.0"?>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
2 <data_managers>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
3 <data_manager tool_file="data_manager/bigg_model_sbml_fetcher.xml" id="bigg_model_sbml_fetcher">
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
4 <data_table name="bigg_model_sbml">
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
5 <output>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
6 <column name="value" />
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
7 <column name="name" />
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
8 <column name="path" output_ref="out_file">
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
9 <move type="file" relativize_symlinks="True">
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
10 <source>${path}</source>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">bigg/model/${name}.xml</target>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
12 </move>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/bigg/model/${name}.xml</value_translation>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
14 <value_translation type="function">abspath</value_translation>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
15 </column>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
16 </output>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
17 </data_table>
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
18 </data_manager>
13
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
19 <data_manager tool_file="data_manager/metanetx_chem_prop_fetcher.xml" id="metanetx_chem_prop_fetcher">
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
20 <data_table name="metanetx_chem_prop">
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
21 <output>
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
22 <column name="value" />
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
23 <column name="name" />
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
24 <column name="inchi" />
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
25 </output>
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
26 </data_table>
c1d4f14dc768 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
ggricourt
parents: 0
diff changeset
27 </data_manager>
0
262b8d79bc08 "planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 19ad973add8651c1a18c1bda789e9296a57044b1"
ggricourt
parents:
diff changeset
28 </data_managers>