Mercurial > repos > gga > tripal_db_index

changeset 6:37e46b23109f draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
author gga
date Tue, 05 Mar 2019 05:06:04 -0500
parents c1df80f03ba6
children dd5e2d3b2a50
files db_index.xml macros.xml
diffstat 2 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/db_index.xml	Mon Feb 25 05:50:30 2019 -0500
+++ b/db_index.xml	Tue Mar 05 05:06:04 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.1">
+<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.0">
     <description>using Elasticsearch</description>
     <macros>
         <import>macros.xml</import>
@@ -45,14 +45,16 @@
 
         &&
 
-        echo "Data loaded" > $results
+        echo "Data loaded" > '$results'
     ]]></command>
     <inputs>
         <conditional name="table">
             <param name="mode"
+                   argument="--mode"
                    type="select"
                    label="Data to index">
                 <option value="website" selected="true">Index all the Tripal content</option>
+                <option value="gene">Index all the genes</option>
                 <option value="table">Index a specific table</option>
                 <option value="nodes">Index all website nodes</option>
                 <option value="entities">Index all website entities (Tripal 3 only)</option>
--- a/macros.xml	Mon Feb 25 05:50:30 2019 -0500
+++ b/macros.xml	Tue Mar 05 05:06:04 2019 -0500
@@ -2,7 +2,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.2">python-tripal</requirement>
+            <requirement type="package" version="3.2.1">python-tripal</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -15,7 +15,7 @@
         </stdio>
     </xml>
 
-    <token name="@WRAPPER_VERSION@">3.2</token>
+    <token name="@WRAPPER_VERSION@">3.2.1</token>
 
     <xml name="citation">
         <citations>