Mercurial > repos > gga > tripal_db_index

diff db_index.xml @ 6:37e46b23109f draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
author gga
date Tue, 05 Mar 2019 05:06:04 -0500
parents c1df80f03ba6
children dd5e2d3b2a50
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--- a/db_index.xml	Mon Feb 25 05:50:30 2019 -0500
+++ b/db_index.xml	Tue Mar 05 05:06:04 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.1">
+<tool id="db_index" profile="16.04" name="Index Tripal data" version="@WRAPPER_VERSION@.0">
     <description>using Elasticsearch</description>
     <macros>
         <import>macros.xml</import>
@@ -45,14 +45,16 @@
 
         &&
 
-        echo "Data loaded" > $results
+        echo "Data loaded" > '$results'
     ]]></command>
     <inputs>
         <conditional name="table">
             <param name="mode"
+                   argument="--mode"
                    type="select"
                    label="Data to index">
                 <option value="website" selected="true">Index all the Tripal content</option>
+                <option value="gene">Index all the genes</option>
                 <option value="table">Index a specific table</option>
                 <option value="nodes">Index all website nodes</option>
                 <option value="entities">Index all website entities (Tripal 3 only)</option>