Mercurial > repos > gga > chado_expression_add_expression

annotate expression_add_expression.xml @ 3:be28eaf8b39f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f6b1d17247047ed5c7701f81d546fb41eb5e2ac8
author gga
date Thu, 24 Jan 2019 03:10:15 -0500
parents 5460dcfd4788
children fa3094eaee87
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
1 <?xml version="1.0"?>
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
2 <tool id="expression_add_expression" name="Chado expression add" version="@WRAPPER_VERSION@.0">
2
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
3 <description></description>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
4 <macros>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
5 <import>macros.xml</import>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
6 </macros>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
7 <expand macro="requirements"/>
0
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
8 <code file="chado.py"/>
2
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
9 <command detect_errors="aggressive"><![CDATA[
0
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
10 @AUTH@
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
11
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
12 chakin expression add_expression
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
13 '$organism_id'
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
14 '$analysis_id'
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
15 '$file_path'
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
16
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
17 > $results
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
18 ]]></command>
2
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
19 <inputs>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
20 <!-- arguments -->
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
21 <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" />
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
22 <param argument="analysis_id" type="select" dynamic_options="list_analyses()" label="Analysis" />
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
23 <param name="file_path" label="Expression matrix" argument="file_path" type="data" format="tabular" help="Tabular file where columns are experimental conditions, and rows are features" />
0
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
24
2
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
25 <expand macro="wait_for"/>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
26 </inputs>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
27 <outputs>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
28 <data format="txt" name="results"/>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
29 </outputs>
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
30 <help>
0
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
31 Add an expression matrix file to the database
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
32
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
33 @HELP@
2
5460dcfd4788 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
gga
parents: 0
diff changeset
34 </help>
0
8df4c23198c1 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 3c4fb887c809face4fbe4602617d6dc094b15864
gga
parents:
diff changeset
35 </tool>