comparison analysis_add_analysis.xml @ 11:bd4ba61d6b66 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea

10:f491bd6466f3

    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="aggressive"><![CDATA[
@AUTH@

chakin analysis add_analysis
'$name'
'$program'
'$programversion'

#if $date_executed:
  --date_executed '$date_executed'
#end if

| jq -S . > '$results'
    ]]></command>
    <inputs>
    <!-- arguments -->
    <param name="name" label="Name" argument="name" type="text" help="analysis name" />
    <param name="program" label="Program" argument="program" type="text" help="analysis program" />
    <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" />
    <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" />

    </param>

    </inputs>
    <outputs>
        <data format="json" name="results" label="Chado analysis add: ${name}"/>
    </outputs>
    <help>
Create an analysis

@HELP@

11:bd4ba61d6b66

    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin analysis add_analysis
'$name'
'$program'
'$programversion'

#if $date_executed:
  --date_executed '$date_executed'
#end if

| jq -S . > '$results'

&& @ZIP_PSQL@
    ]]></command>
    <inputs>
    <expand macro="psql_target"/>
    <!-- arguments -->
    <param name="name" label="Name" argument="name" type="text" help="analysis name" />
    <param name="program" label="Program" argument="program" type="text" help="analysis program" />
    <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" />
    <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" />

    </param>

    </inputs>
    <outputs>
        <data format="json" name="results" label="Chado analysis add: ${name}"/>
        <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} '${name}' on ${on_string}">
          <filter>psql_target['method'] == "pgtools"</filter>
        </data>
    </outputs>
    <help>
Create an analysis

@HELP@