Mercurial > repos > get > halley_test1
view job_conf.xml @ 0:14e515eec1bc draft default tip
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| author | get |
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| date | Tue, 15 Oct 2013 02:56:03 -0400 |
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<?xml version="1.0"?> <job_conf> <plugins workers="4"> <!-- "workers" is the number of threads for the runner's work queue. The default from <plugins> is used if not defined for a <plugin>. --> <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/> <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" workers="2"/> <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/> <plugin id="lwr" type="runner" load="galaxy.jobs.runners.lwr:LwrJobRunner" /> <!-- https://lwr.readthedocs.org --> <plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" /> <plugin id="condor" type="runner" load="galaxy.jobs.runners.condor:CondorJobRunner" /> </plugins> <handlers default="handlers"> <!-- Additional job handlers - the id should match the name of a [server:<id>] in universe_wsgi.ini. --> <handler id="handler0" tags="handlers"/> <handler id="handler1" tags="handlers"/> <handler id="special_handler0" tags="special_handlers"/> <handler id="special_handler1" tags="special_handlers"/> <handler id="trackster_handler"/> </handlers> <destinations default="local"> <!-- Destinations define details about remote resources and how jobs should be executed on those remote resources. --> <destination id="local" runner="local"/> <destination id="pbs" runner="pbs" tags="mycluster"/> <destination id="pbs_longjobs" runner="pbs" tags="mycluster,longjobs"> <!-- Define parameters that are native to the job runner plugin. --> <param id="Resource_List">walltime=72:00:00</param> </destination> <destination id="remote_cluster" runner="drmaa" tags="longjobs"/> <destination id="real_user_cluster" runner="drmaa"> <!-- TODO: The real user options should maybe not be considered runner params. --> <param id="galaxy_external_runjob_script">scripts/drmaa_external_runner.py</param> <param id="galaxy_external_killjob_script">scripts/drmaa_external_killer.py</param> <param id="galaxy_external_chown_script">scripts/external_chown_script.py</param> </destination> <destination id="dynamic" runner="dynamic"> <!-- A destination that represents a method in the dynamic runner. --> <param id="function">foo</param> </destination> <destination id="secure_lwr" runner="lwr"> <param id="url">https://windowshost.examle.com:8913/</param> <!-- If set, private_token must match token remote LWR server configured with. --> <param id="private_token">123456789changeme</param> </destination> <destination id="ssh_torque" runner="cli"> <param id="shell_plugin">SecureShell</param> <param id="job_plugin">Torque</param> <param id="shell_username">foo</param> <param id="shell_hostname">foo.example.org</param> <param id="Job_Execution_Time">24:00:00</param> </destination> <destination id="condor" runner="condor"> <!-- With no params, jobs are submitted to the 'vanilla' universe with: notification = NEVER getenv = true Additional/override query ClassAd params can be specified with <param> tags. --> <param id="request_cpus">8</param> </destination> </destinations> <tools> <!-- Tools can be configured to use specific destinations or handlers, identified by either the "id" or "tags" attribute. If assigned to a tag, a handler or destination that matches that tag will be chosen at random. --> <tool id="foo" handler="trackster_handler"> <param id="source">trackster</param> </tool> <tool id="bar" destination="dynamic"/> <tool id="baz" handler="special_handlers" destination="bigmem"/> </tools> <limits> <!-- Certain limits can be defined. --> <limit type="registered_user_concurrent_jobs">2</limit> <limit type="unregistered_user_concurrent_jobs">1</limit> <limit type="job_walltime">24:00:00</limit> <limit type="concurrent_jobs" id="local">1</limit> <limit type="concurrent_jobs" tag="mycluster">2</limit> <limit type="concurrent_jobs" tag="longjobs">1</limit> </limits> </job_conf>
