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1 <?xml version="1.0"?>
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2 <job_conf>
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3 <plugins workers="4">
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4 <!-- "workers" is the number of threads for the runner's work queue.
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5 The default from <plugins> is used if not defined for a <plugin>.
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6 -->
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7 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner"/>
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8 <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" workers="2"/>
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9 <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/>
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10 <plugin id="lwr" type="runner" load="galaxy.jobs.runners.lwr:LwrJobRunner" /> <!-- https://lwr.readthedocs.org -->
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11 <plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" />
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12 <plugin id="condor" type="runner" load="galaxy.jobs.runners.condor:CondorJobRunner" />
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13 </plugins>
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14 <handlers default="handlers">
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15 <!-- Additional job handlers - the id should match the name of a
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16 [server:<id>] in universe_wsgi.ini.
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17 -->
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18 <handler id="handler0" tags="handlers"/>
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19 <handler id="handler1" tags="handlers"/>
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20 <handler id="special_handler0" tags="special_handlers"/>
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21 <handler id="special_handler1" tags="special_handlers"/>
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22 <handler id="trackster_handler"/>
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23 </handlers>
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24 <destinations default="local">
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25 <!-- Destinations define details about remote resources and how jobs
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26 should be executed on those remote resources.
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27 -->
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28 <destination id="local" runner="local"/>
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29 <destination id="pbs" runner="pbs" tags="mycluster"/>
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30 <destination id="pbs_longjobs" runner="pbs" tags="mycluster,longjobs">
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31 <!-- Define parameters that are native to the job runner plugin. -->
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32 <param id="Resource_List">walltime=72:00:00</param>
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33 </destination>
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34 <destination id="remote_cluster" runner="drmaa" tags="longjobs"/>
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35 <destination id="real_user_cluster" runner="drmaa">
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36 <!-- TODO: The real user options should maybe not be considered runner params. -->
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37 <param id="galaxy_external_runjob_script">scripts/drmaa_external_runner.py</param>
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38 <param id="galaxy_external_killjob_script">scripts/drmaa_external_killer.py</param>
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39 <param id="galaxy_external_chown_script">scripts/external_chown_script.py</param>
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40 </destination>
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41 <destination id="dynamic" runner="dynamic">
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42 <!-- A destination that represents a method in the dynamic runner. -->
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43 <param id="function">foo</param>
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44 </destination>
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45 <destination id="secure_lwr" runner="lwr">
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46 <param id="url">https://windowshost.examle.com:8913/</param>
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47 <!-- If set, private_token must match token remote LWR server configured with. -->
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48 <param id="private_token">123456789changeme</param>
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49 </destination>
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50 <destination id="ssh_torque" runner="cli">
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51 <param id="shell_plugin">SecureShell</param>
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52 <param id="job_plugin">Torque</param>
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53 <param id="shell_username">foo</param>
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54 <param id="shell_hostname">foo.example.org</param>
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55 <param id="Job_Execution_Time">24:00:00</param>
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56 </destination>
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57 <destination id="condor" runner="condor">
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58 <!-- With no params, jobs are submitted to the 'vanilla' universe with:
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59 notification = NEVER
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60 getenv = true
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61 Additional/override query ClassAd params can be specified with
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62 <param> tags.
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63 -->
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64 <param id="request_cpus">8</param>
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65 </destination>
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66 </destinations>
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67 <tools>
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68 <!-- Tools can be configured to use specific destinations or handlers,
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69 identified by either the "id" or "tags" attribute. If assigned to
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70 a tag, a handler or destination that matches that tag will be
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71 chosen at random.
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72 -->
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73 <tool id="foo" handler="trackster_handler">
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74 <param id="source">trackster</param>
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75 </tool>
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76 <tool id="bar" destination="dynamic"/>
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77 <tool id="baz" handler="special_handlers" destination="bigmem"/>
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78 </tools>
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79 <limits>
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80 <!-- Certain limits can be defined. -->
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81 <limit type="registered_user_concurrent_jobs">2</limit>
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82 <limit type="unregistered_user_concurrent_jobs">1</limit>
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83 <limit type="job_walltime">24:00:00</limit>
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84 <limit type="concurrent_jobs" id="local">1</limit>
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85 <limit type="concurrent_jobs" tag="mycluster">2</limit>
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86 <limit type="concurrent_jobs" tag="longjobs">1</limit>
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87 </limits>
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88 </job_conf>
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