Mercurial > repos > george-weingart > graphlan_import

changeset 11:8cfabe8759ab draft

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Uploaded
author george-weingart
date Thu, 04 Sep 2014 14:16:14 -0400
parents 733dfa77c6de
children 389074508060
files export2graphlan.xml
diffstat 1 files changed, 3 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/export2graphlan.xml	Thu Sep 04 14:12:26 2014 -0400
+++ b/export2graphlan.xml	Thu Sep 04 14:16:14 2014 -0400
@@ -40,7 +40,7 @@
 
  * **Output of LEfSe**: This file is the result of LEfSe execute on the *Result of MetaPhlAn or HUMAnN analysis* file. This file allow GraPhlAn to highlight for you the found biomarkers.
 
-Input parameters5555
+Input parameters6666
 --------------------
  
     --annotations ANNOTATIONS
@@ -124,13 +124,9 @@
     Input data matrix parameters:
     --sep SEP
     --out_table OUT_TABLE   : This is where to write the  processed data matrix to file
-    --fname_row FNAME_ROW   :  Row number containing the names of the features
-                        [default 0, specify -1 if no names are present in the
-                        matrix
+    --fname_row FNAME_ROW   :  Row number containing the names of the features (default 0, specify -1 if no names are present in the matrix)
     --sname_row SNAME_ROW
-                        column number containing the names of the samples
-                        [default 0, specify -1 if no names are present in the
-                        matrix
+                        column number containing the names of the samples (default 0, specify -1 if no names are present in the matrix)
     --metadata_rows METADATA_ROWS
                         Row numbers to use as metadata[default None, meaning
                         no metadata