Mercurial > repos > george-weingart > graphlan_import
changeset 49:235f15156be5 draft
Uploaded
| author | george-weingart |
|---|---|
| date | Sat, 06 Sep 2014 14:19:28 -0400 |
| parents | 85f3824934ab |
| children | 542e087598a2 |
| files | import2graphlan.xml |
| diffstat | 1 files changed, 3 insertions(+), 11 deletions(-) [+] |
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--- a/import2graphlan.xml Sat Sep 06 14:16:10 2014 -0400 +++ b/import2graphlan.xml Sat Sep 06 14:19:28 2014 -0400 @@ -114,21 +114,16 @@ **--external_annotations** EXTERNAL_ANNOTATIONS - List which levels should use the external legend for the annotation. Use a comma separate values form, - e.g., --annotation_levels 1,2,3. Default is None + List which levels should use the external legend for the annotation. Use a comma separate values form, e.g., --annotation_levels 1,2,3. Default is None **--background_levels** BACKGROUND_LEVELS - List which levels should be highlight with a shaded - background. Use a comma separate values form, e.g., - --background_levels 1,2,3 + List which levels should be highlight with a shaded background. Use a comma separate values form, e.g.,--background_levels 1,2,3 **--background_clades** BACKGROUND_CLADES Specify the clades that should be highlight with a shaded background. Use a comma separate values form and surround the string with " if it contains spaces. - Example: --background_clades "Bacteria.Actinobacteria, - Bacteria.Bacteroidetes.Bacteroidia, - Bacteria.Firmicutes.Clostridia.Clostridiales" + Example: --background_clades "Bacteria.Actinobacteria, Bacteria.Bacteroidetes.Bacteroidia,Bacteria.Firmicutes.Clostridia.Clostridiales" **--background_colors** BACKGROUND_COLORS @@ -137,9 +132,6 @@ Example: #29cc36, (150; 100; 100), (280;80; 88) - - - **--title TITLE** If specified set the title of the GraPhlAn plot. Surround the string with " if it contains spaces, e.g., --title "Title example"