Mercurial > repos > geert-vandeweyer > package_velvet

changeset 2:362f865532d8 draft default tip

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Uploaded
author geert-vandeweyer
date Mon, 11 Aug 2014 05:23:16 -0400
parents b4a34f56778b
children
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jul 28 05:45:04 2014 -0400
+++ b/tool_dependencies.xml	Mon Aug 11 05:23:16 2014 -0400
@@ -10,7 +10,7 @@
 				<action type="move_file"><source>velvetg</source><destination>$INSTALL_DIR/bin</destination></action>
 
               			<action type="set_environment">
-				 	<environment_variable action="set_to" name="OMP_THREAD_LIMIT">1</environment_variable>
+				 	<environment_variable action="set_to" name="OMP_THREAD_LIMIT">2</environment_variable>
 					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
 				</action>
 			</actions>
@@ -23,7 +23,7 @@
 
 This package downloads, compiles and adds velvetg and velveth to &lt;$PATH&gt;. Enabled compiling options are:
 
-- OPENMP : allow multithreading. Set the number of threads in &lt;tool_dependency_dir&gt;/environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet/&lt;hash_string&gt;/env.sh
+- OPENMP : allow multithreading. Set the number of threads (must be at least 2!)  in &lt;tool_dependency_dir&gt;/environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet/&lt;hash_string&gt;/env.sh
 - LONGSEQUENCES : allow long (>32kb) contigs