Mercurial > repos > geert-vandeweyer > package_velvet
changeset 2:362f865532d8 draft default tip
Uploaded
author | geert-vandeweyer |
---|---|
date | Mon, 11 Aug 2014 05:23:16 -0400 |
parents | b4a34f56778b |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Mon Jul 28 05:45:04 2014 -0400 +++ b/tool_dependencies.xml Mon Aug 11 05:23:16 2014 -0400 @@ -10,7 +10,7 @@ <action type="move_file"><source>velvetg</source><destination>$INSTALL_DIR/bin</destination></action> <action type="set_environment"> - <environment_variable action="set_to" name="OMP_THREAD_LIMIT">1</environment_variable> + <environment_variable action="set_to" name="OMP_THREAD_LIMIT">2</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions> @@ -23,7 +23,7 @@ This package downloads, compiles and adds velvetg and velveth to <$PATH>. Enabled compiling options are: -- OPENMP : allow multithreading. Set the number of threads in <tool_dependency_dir>/environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet/<hash_string>/env.sh +- OPENMP : allow multithreading. Set the number of threads (must be at least 2!) in <tool_dependency_dir>/environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet/<hash_string>/env.sh - LONGSEQUENCES : allow long (>32kb) contigs