Mercurial > repos > geert-vandeweyer > package_rseqc
changeset 0:704642a18837 draft
Uploaded
author | geert-vandeweyer |
---|---|
date | Tue, 29 Jul 2014 08:30:57 -0400 |
parents | |
children | 35154a48b485 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 30 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jul 29 08:30:57 2014 -0400 @@ -0,0 +1,30 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="python" version="2.7"> + <repository changeset_revision="1e1fd239d5cf" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu"/> + </package> + <package name="rseqc" version="2.3.9"> + <install version = "1.0"> + <actions> + <!-- Not sure why these must be made apriori, but install fails otherwise --> + <action type="download_by_url">http://sourceforge.net/projects/rseqc/files/RSeQC-2.3.9.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="1e1fd239d5cf" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="python" version="2.7" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="make_directory">$INSTALL_DIR/lib64/python</action> + <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> + <action type="set_environment"> + <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + RSeQC version 2.3.9, documentation available at http://rseqc.sourceforge.net/. + Requires gcc and python 2.7. This package is a test to include python 2.7 installation as a pre-installation dependency. + </readme> + </package> +</tool_dependency>